Download assemblies
Choose a haplotype below, or download the complete collection with the script.
Download once. Verify before analysis.
The bulk script downloads all 12 files with curl, resumes interrupted transfers, and verifies each MD5 checksum. Save the script, then run it in the directory where you want the assemblies:
bash download_dog_genomes.shFor individual downloads, save the MD5 checksums in the same directory as the assemblies and verify with:
md5sum -c MD5SUMS.txt # Linux
md5 Appa_hap1_ragtag.fasta.gz # macOS: compare with the listed MD5File sizes, haplotypes, and data availability
Sizes use decimal MB and GB (1 MB = 1,000,000 bytes). Hover or focus on a file size for its exact byte count; the manifest includes exact sizes, filenames, MD5 checksums, and download URLs. Haplotype 1 and 2 identify the two assemblies for each dog; no maternal or paternal assignment is implied.
Assemblies are hosted on Dropbox while NCBI deposition is in progress. All links point to the original compressed FASTA files. Please cite the associated Panagram study when using these assemblies.